species:   Scscl
pid:       PID1611
parent:    Ssc-milR-87
paralog:   
locus:     NW_001820832.1:432068-432113
matures:   ['UGGCUUGAUUGUAGUCUGG', 'CGACACUUGAGCUUGG']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820832.1:432068-432113

4 out of bounds
13 alignments
9 proper strand
9 stranded perfect matches

*******************          **************** 
UUGGCUUGAUUGUAGUCUGGAUGCUAGUCUCGACACUUGAGCUUGG
..(((((((..((.(((.((((....)))).))))))))))))...
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=2 c
------------------------------CGACACUUGAGCUUGG l=16 a=0 c*
UUGGCUUGAUUGUAGUCUG--------------------------- l=19 a=3 ma
-------------------------------GACACUUGAGCUUG- l=14 a=0 ma*

UUGGCUUGAUUGUAGUCUG--------------------------- l=19 a=3 (ma)
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=2 (c)
----------UGUAGUCUGGAUGCUAGUCU---------------- l=20 a=2 
-----------------UGGAUGCUAGUCUCGACACU--------- l=20 a=1 
---------------------UGCUAGUCUCGACACUUGAG----- l=20 a=1 

mb-01011
ax-1011001
ku-01
ss-101010111100
fn-101
